Pairwise fitting pdb-1p58 on emdb-5181 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-5181 by gmfit(PID:563268).





RANK[1] Corr.Coeff:0.095

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-5181)

display:



color:


The structure of avian polyomavirus (empty capsids) treated with 250 mM L-arginine [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.095
0.082
0.074
0.074
0.071
0.067
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5181.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.302296,0.951305,0.060296 172.505989 center 0,0,0 model #1
move -6.547673,-24.218553,404.988120 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!