Pairwise fitting pdb-1p58 on emdb-2933 by gmfit










Pairwise fitting of target pdb-1p58 on reference emdb-2933 by gmfit(PID:4125025).





RANK[1] Corr.Coeff:0.123

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1p58)

display:



color:



b'COMPLEX ORGANIZATION OF DENGUE VIRUS MEMBRANE PROTEINS AS REVEALED BY ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1p58)]







REFERENCE(emdb-2933)

display:



color:


Cryo-EM single particle reconstruction of Rosellinia necatrix megabirnavirus 1 reconstructed with the mixture of empty and full particles [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.123
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2933.map.gz", and read it.

  2.  Download the Target molecule "1p58"(PDB-format) or
  "1p58"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.581946,-0.763237,0.280727 132.427908 center 0,0,0 model #1
move 89.008851,354.211660,175.557272 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2933)]

[Download the target GMM(pdb 1p58)]

[Download gmfit result file(4125025)]