Pairwise fitting pdb-1k4r on pdb-4c2i by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-4c2i by gmfit(PID:3571379).





RANK[1] Corr.Coeff:0.578

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-4c2i)

display:



color:


b'CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 1 COMPLEXED WITH FAB       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.578
0.446
0.396
0.375
0.365
0.331
0.328
0.316
0.308
0.225







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4c2i"(PDB-format) or 
 "4c2i"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.275400,-0.028701,-0.960901 176.746797 center 0,0,0 model #1
move -4.890575,-18.068880,-15.474462 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!