Pairwise fitting pdb-1k4r on pdb-4bx4 by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-4bx4 by gmfit(PID:1159281).

RANK[1] Corr.Coeff:0.667 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-4bx4)
display:
color:
b'FITTING OF THE BACTERIOPHAGE PHI8 P1 CAPSID PROTEIN INTO CRYO-EM ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.667 0.613 0.507 0.479 0.341 0.334 0.295 0.277 0.241 0.241

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4bx4"(PDB-format) or "4bx4"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.390274,-0.915483,-0.097864 143.038622 center 0,0,0 model #1
    move 374.839161,356.371167,390.373904 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!