Pairwise fitting pdb-1k4r on pdb-3c6r by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-3c6r by gmfit(PID:3198236).





RANK[1] Corr.Coeff:0.788

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-3c6r)

display:



color:


b'LOW PH IMMATURE DENGUE VIRUS                                          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.788
0.701
0.522
0.508
0.464
0.392
0.349
0.325
0.304
0.242







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3c6r"(PDB-format) or 
 "3c6r"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.859724,-0.221818,0.460078 7.752930 center 0,0,0 model #1
move 3.829598,26.426757,-4.750342 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!