Pairwise fitting pdb-1k4r on pdb-1tge by gmfit



Pairwise fitting of target pdb-1k4r on reference pdb-1tge by gmfit(PID:1629503).

RANK[1] Corr.Coeff:0.323 [JSmol] [Molmil]
TARGET(pdb-1k4r)
display:
color:
b'STRUCTURE OF DENGUE VIRUS ' [Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-1k4r)]
REFERENCE(pdb-1tge)
display:
color:
b'THE STRUCTURE OF IMMATURE DENGUE VIRUS AT 12.5 ANGSTROM ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.323 0.316 0.298 0.277 0.251 0.217 0.181 0.162 0.161 0.145

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "1tge"(PDB-format) or "1tge"(mmCIF-format), and read it.
  2. Download the Target molecule "1k4r"(PDB-format) or "1k4r"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.039862,0.245477,-0.968583 129.167232 center 0,0,0 model #1
    move 31.202630,40.542567,-2.397104 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!