Pairwise fitting pdb-1k4r on pdb-1if0 by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-1if0 by gmfit(PID:3873418).





RANK[1] Corr.Coeff:0.505

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-1if0)

display:



color:


b'PSEUDO-ATOMIC MODEL OF BACTERIOPHAGE HK97 PROCAPSID (PROHEAD II)      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.505
0.440
0.414
0.412
0.402
0.386
0.356
0.308
0.267
0.254







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1if0"(PDB-format) or 
 "1if0"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.324361,0.724706,0.607940 82.451060 center 0,0,0 model #1
move 8.463369,30.161646,-35.985248 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!