Pairwise fitting pdb-1k4r on emdb-5838 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-5838 by gmfit(PID:3838972).





RANK[1] Corr.Coeff:0.078

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-5838)

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Characterization of Human Papilloma Virus Type 11 VLP decorated with antibody fragment H11.B2 B2 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.078
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5838.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.500282,0.744082,0.442786 90.314040 center 0,0,0 model #1
move -1.025706,11.312975,2.852842 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!