Pairwise fitting pdb-1k4r on emdb-5181 by gmfit










Pairwise fitting of target pdb-1k4r on reference emdb-5181 by gmfit(PID:3537813).





RANK[1] Corr.Coeff:0.088

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

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b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(emdb-5181)

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The structure of avian polyomavirus (empty capsids) treated with 250 mM L-arginine [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.088
0.056
0.053
0.053
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5181.map.gz", and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.080126,0.062365,-0.994832 82.786615 center 0,0,0 model #1
move 6.064909,-8.849445,-36.117648 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!