Pairwise fitting emdb-5372 on pdb-4bip by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-4bip by gmfit(PID:3795742).





RANK[1] Corr.Coeff:0.078

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-4bip)

display:



color:


b'HOMOLOGY MODEL OF COXSACKIEVIRUS A7 (CAV7) FULL CAPSID PROTEINS.      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.078
0.012
0.010
0.010
0.007
0.007
0.004
0.003
0.003
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bip"(PDB-format) or 
 "4bip"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.683869,0.171375,-0.709192 71.233085 center 0,0,0 model #1
move 71.373704,-58.184898,123.890210 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!