Pairwise fitting emdb-5372 on pdb-3jbm by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-3jbm by gmfit(PID:4102585).





RANK[1] Corr.Coeff:0.079

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-3jbm)

display:



color:


b'ELECTRON CRYO-MICROSCOPY OF A VIRUS-LIKE PARTICLE OF ORANGE-SPOTTED   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.079
0.030
0.017
0.013
0.013
0.009
0.009
0.009
0.002
0.001







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jbm"(PDB-format) or 
 "3jbm"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.234747,0.820022,0.521975 165.421570 center 0,0,0 model #1
move 139.001314,199.570676,356.008964 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3jbm)]

[Download the target GMM(emdb 5372)]

[Download gmfit result file(4102585)]