Pairwise fitting emdb-5372 on pdb-3jbm by gmfit



Pairwise fitting of target emdb-5372 on reference pdb-3jbm by gmfit(PID:4102585).

RANK[1] Corr.Coeff:0.079 [JSmol] [Molmil]
TARGET(emdb-5372)
display:
color:
Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5372)]
REFERENCE(pdb-3jbm)
display:
color:
b'ELECTRON CRYO-MICROSCOPY OF A VIRUS-LIKE PARTICLE OF ORANGE-SPOTTED ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.079 0.030 0.017 0.013 0.013 0.009 0.009 0.009 0.002 0.001

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3jbm"(PDB-format) or "3jbm"(mmCIF-format), and read it.
  2. Download the Target map "emd_5372.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.234747,0.820022,0.521975 165.421570 center 0,0,0 model #1
    move 139.001314,199.570676,356.008964 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3jbm)] [Download the target GMM(emdb 5372)] [Download gmfit result file(4102585)]