Pairwise fitting emdb-5372 on pdb-3j48 by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-3j48 by gmfit(PID:3924534).





RANK[1] Corr.Coeff:0.096

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

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color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-3j48)

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color:


b'CRYO-EM STRUCTURE OF POLIOVIRUS 135S PARTICLES                        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.096
0.013
0.012
0.012
0.010
0.007
0.005
0.004
0.003
0.001







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j48"(PDB-format) or 
 "3j48"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.620571,0.457335,0.636975 117.537593 center 0,0,0 model #1
move 78.946045,-64.835143,112.059781 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!