Pairwise fitting emdb-5372 on pdb-3iyp by gmfit










Pairwise fitting of target emdb-5372 on reference pdb-3iyp by gmfit(PID:3644477).





RANK[1] Corr.Coeff:0.114

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5372)

display:



color:



Structural transitions in RCNMV revealing potential mechanism of RNA release (EGTA map) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5372)]







REFERENCE(pdb-3iyp)

display:



color:


b'THE INTERACTION OF DECAY-ACCELERATING FACTOR WITH ECHOVIRUS 7         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.114
0.005
0.005
0.005
0.004
0.004
0.004
0.004
0.004
0.004







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iyp"(PDB-format) or 
 "3iyp"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5372.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.421020,-0.485694,-0.766057 161.832672 center 0,0,0 model #1
move 46.239360,111.154218,70.054492 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!