Pairwise fitting emdb-5168 on pdb-4bom by gmfit










Pairwise fitting of target emdb-5168 on reference pdb-4bom by gmfit(PID:4062177).





RANK[1] Corr.Coeff:0.557

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

display:



color:



Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(pdb-4bom)

display:



color:


b'STRUCTURE OF HERPESVIRUS FUSION GLYCOPROTEIN B-BILAYER COMPLEX        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.557
0.555
0.554
0.551
0.542
0.542
0.541
0.538
0.245
0.235







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4bom"(PDB-format) or 
 "4bom"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.064235,0.165860,0.984055 15.279341 center 0,0,0 model #1
move 0.815108,0.306210,8.753601 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4bom)]

[Download the target GMM(emdb 5168)]

[Download gmfit result file(4062177)]