Pairwise fitting emdb-5168 on pdb-2xkv by gmfit










Pairwise fitting of target emdb-5168 on reference pdb-2xkv by gmfit(PID:519122).





RANK[1] Corr.Coeff:0.399

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

display:



color:



Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(pdb-2xkv)

display:



color:


b'ATOMIC MODEL OF THE SRP-FTSY EARLY CONFORMATION                       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.399
0.389
0.373
0.369
0.341
0.338
0.326
0.303
0.293
0.259







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2xkv"(PDB-format) or 
 "2xkv"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.887803,-0.450355,0.094794 138.239342 center 0,0,0 model #1
move 314.205011,186.057332,171.119049 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!