Pairwise fitting emdb-5168 on emdb-5132 by gmfit










Pairwise fitting of target emdb-5168 on reference emdb-5132 by gmfit(PID:4124116).





RANK[1] Corr.Coeff:0.458

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5168)

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Direct visualization of secondary structures of F-actin by electron cryomicroscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5168)]







REFERENCE(emdb-5132)

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The reconstructed F120 amyloid fibril represents the structure of a selected subpopulation from the Abeta(1-40) fibril sample with a mean crossover distance of 120 nm. The F140 subpopulation with a mean crossover distance of 140 nm had been studied and deposited previously (EMDB accession no. 5008). [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.458
0.446
0.433
0.431
0.428
0.421
0.420
0.415
0.270
0.234







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5132.map.gz", and read it.

  2.  Download the Target map "emd_5168.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.302283,0.934557,0.187691 92.643075 center 0,0,0 model #1
move 107.550539,50.503973,22.416107 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!