Pairwise fitting emdb-5111 on pdb-3j48 by gmfit



Pairwise fitting of target emdb-5111 on reference pdb-3j48 by gmfit(PID:4131688).

RANK[1] Corr.Coeff:0.064 [JSmol] [Molmil]
TARGET(emdb-5111)
display:
color:
Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5111)]
REFERENCE(pdb-3j48)
display:
color:
b'CRYO-EM STRUCTURE OF POLIOVIRUS 135S PARTICLES ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.064 0.007 0.001 0.001 0.001 0.000 0.000 0.000 0.000 0.000

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j48"(PDB-format) or "3j48"(mmCIF-format), and read it.
  2. Download the Target map "emd_5111.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.768918,-0.632921,0.090421 151.704852 center 0,0,0 model #1
    move 71.077515,-36.808084,117.600477 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 3j48)] [Download the target GMM(emdb 5111)] [Download gmfit result file(4131688)]