Pairwise fitting emdb-5111 on pdb-3iyp by gmfit










Pairwise fitting of target emdb-5111 on reference pdb-3iyp by gmfit(PID:4060493).





RANK[1] Corr.Coeff:0.015

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5111)

display:



color:



Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5111)]







REFERENCE(pdb-3iyp)

display:



color:


b'THE INTERACTION OF DECAY-ACCELERATING FACTOR WITH ECHOVIRUS 7         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.015
0.009
0.005
0.005
0.004
0.004
0.004
0.004
0.003
0.003







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3iyp"(PDB-format) or 
 "3iyp"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5111.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.938360,-0.034021,-0.343982 113.278043 center 0,0,0 model #1
move 31.756893,35.368272,115.344191 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3iyp)]

[Download the target GMM(emdb 5111)]

[Download gmfit result file(4060493)]