Pairwise fitting emdb-5111 on pdb-3epd by gmfit










Pairwise fitting of target emdb-5111 on reference pdb-3epd by gmfit(PID:2454566).





RANK[1] Corr.Coeff:0.083

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5111)

display:



color:



Feline panleukopenia virus in complex with FAb from neutralizing antibody MAb E [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5111)]







REFERENCE(pdb-3epd)

display:



color:


b'CRYOEM STRUCTURE OF POLIOVIRUS RECEPTOR BOUND TO POLIOVIRUS TYPE 3    ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.083
0.005
0.004
0.003
0.003
0.003
0.003
0.003
0.002
0.002







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3epd"(PDB-format) or 
 "3epd"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5111.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.682891,0.185308,0.706627 142.711160 center 0,0,0 model #1
move -111.854406,-15.648690,3.045291 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!