Pairwise fitting emdb-5034 on pdb-5wc3 by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-5wc3 by gmfit(PID:4167794).





RANK[1] Corr.Coeff:0.568

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-5wc3)

display:



color:


b'SPOIIIAG                                                              ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.568
0.566
0.564
0.551
0.499
0.494
0.493
0.492
0.204
0.204







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5wc3"(PDB-format) or 
 "5wc3"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.928477,-0.371391,0.000000 180.000000 center 0,0,0 model #1
move 134.095864,410.894843,338.552944 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!