Pairwise fitting emdb-5034 on pdb-5nzu by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-5nzu by gmfit(PID:3701020).





RANK[1] Corr.Coeff:0.390

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

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Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-5nzu)

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b'THE STRUCTURE OF THE COPI COAT LINKAGE II                             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.390
0.384
0.357
0.346
0.303
0.280
0.278
0.278
0.268
0.242







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5nzu"(PDB-format) or 
 "5nzu"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.886992,0.460265,0.037431 146.496437 center 0,0,0 model #1
move -172.269598,267.085254,282.557413 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!