Pairwise fitting emdb-5034 on pdb-5np0 by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-5np0 by gmfit(PID:209681).





RANK[1] Corr.Coeff:0.424

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-5np0)

display:



color:


b'CLOSED DIMER OF HUMAN ATM (ATAXIA TELANGIECTASIA MUTATED)             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.424
0.407
0.403
0.394
0.391
0.386
0.384
0.377
0.225
0.223







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5np0"(PDB-format) or 
 "5np0"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.630963,0.563057,0.533716 101.839861 center 0,0,0 model #1
move 304.704579,-5.521905,401.167000 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!