Pairwise fitting emdb-5034 on pdb-5mcy by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-5mcy by gmfit(PID:3644740).





RANK[1] Corr.Coeff:0.521

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-5mcy)

display:



color:


b'THE STRUCTURE OF THE MATURE HIV-1 CA PENTAMER IN INTACT VIRUS         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.521
0.517
0.501
0.495
0.378
0.373
0.372
0.365
0.220
0.214







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mcy"(PDB-format) or 
 "5mcy"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.833013,0.553246,0.002644 177.962869 center 0,0,0 model #1
move -92.350838,52.389861,307.809308 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!