Pairwise fitting emdb-5034 on pdb-5li2 by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-5li2 by gmfit(PID:3578087).





RANK[1] Corr.Coeff:0.506

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-5li2)

display:



color:


b'BACTERIOPHAGE PHI812K1-420 TAIL SHEATH AND TAIL TUBE PROTEIN IN NATIVE' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.506
0.505
0.504
0.496
0.438
0.429
0.400
0.381
0.202
0.193







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5li2"(PDB-format) or 
 "5li2"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.002772,-0.003424,0.999990 167.045910 center 0,0,0 model #1
move 212.626447,131.616719,-180.579586 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!