Pairwise fitting emdb-5034 on pdb-3a69 by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-3a69 by gmfit(PID:4160924).





RANK[1] Corr.Coeff:0.109

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-3a69)

display:



color:


b'ATOMIC MODEL OF THE BACTERIAL FLAGELLAR HOOK BASED ON DOCKING AN X-RAY' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.109
0.084
0.073
0.069
0.068
0.067
0.067
0.065
0.060
0.060







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3a69"(PDB-format) or 
 "3a69"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.231804,0.209787,0.949872 177.127471 center 0,0,0 model #1
move 75.663833,127.323216,-264.662420 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!