Pairwise fitting emdb-5034 on pdb-1foq by gmfit










Pairwise fitting of target emdb-5034 on reference pdb-1foq by gmfit(PID:3294016).





RANK[1] Corr.Coeff:0.285

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(pdb-1foq)

display:



color:


b'PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA               ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.285
0.227
0.227
0.224
0.224
0.223
0.223
0.219
0.153
0.151







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "1foq"(PDB-format) or 
 "1foq"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.118613,0.146358,0.982095 127.573417 center 0,0,0 model #1
move 90.023226,-159.655761,-273.523928 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!