Pairwise fitting emdb-5034 on emdb-5023 by gmfit










Pairwise fitting of target emdb-5034 on reference emdb-5023 by gmfit(PID:3590348).





RANK[1] Corr.Coeff:0.407

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5034)

display:



color:



Structure of a type IV secretion system core complex [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5034)]







REFERENCE(emdb-5023)

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color:


Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.407
0.402
0.402
0.394
0.308
0.307
0.306
0.304
0.217
0.213







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5023.map.gz", and read it.

  2.  Download the Target map "emd_5034.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.292413,0.956290,0.002099 180.000000 center 0,0,0 model #1
move 247.000883,-39.926197,255.905038 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!