Pairwise fitting emdb-5023 on pdb-5np0 by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-5np0 by gmfit(PID:3429750).





RANK[1] Corr.Coeff:0.506

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-5np0)

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color:


b'CLOSED DIMER OF HUMAN ATM (ATAXIA TELANGIECTASIA MUTATED)             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.506
0.475
0.472
0.470
0.466
0.462
0.455
0.454
0.269
0.269







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5np0"(PDB-format) or 
 "5np0"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.987635,0.156512,0.009013 86.190979 center 0,0,0 model #1
move 30.718430,136.383728,439.739589 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!