Pairwise fitting emdb-5023 on pdb-4udv by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-4udv by gmfit(PID:1280235).





RANK[1] Corr.Coeff:0.194

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-4udv)

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b'CRYO-EM STRUCTURE OF TMV AT 3.35 A RESOLUTION                         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.194
0.169
0.167
0.164
0.161
0.158
0.154
0.152
0.147
0.132







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4udv"(PDB-format) or 
 "4udv"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.411404,0.900416,-0.141412 178.640476 center 0,0,0 model #1
move 39.179751,-278.886537,204.576911 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!