Pairwise fitting emdb-5023 on pdb-3jar by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-3jar by gmfit(PID:3665118).





RANK[1] Corr.Coeff:0.532

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-3jar)

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b'CRYO-EM STRUCTURE OF GDP-MICROTUBULE CO-POLYMERIZED WITH EB3          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.532
0.525
0.517
0.500
0.495
0.489
0.488
0.485
0.275
0.262







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3jar"(PDB-format) or 
 "3jar"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.352943,0.620955,-0.699889 178.312873 center 0,0,0 model #1
move 510.688478,655.855718,424.316063 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!