Pairwise fitting emdb-5023 on pdb-2om3 by gmfit










Pairwise fitting of target emdb-5023 on reference pdb-2om3 by gmfit(PID:1243136).





RANK[1] Corr.Coeff:0.192

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(pdb-2om3)

display:



color:


b'HIGH-RESOLUTION CRYO-EM STRUCTURE OF TOBACCO MOSAIC VIRUS             ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.192
0.175
0.172
0.162
0.161
0.154
0.152
0.146
0.145
0.139







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "2om3"(PDB-format) or 
 "2om3"(mmCIF-format), and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.148963,0.071446,0.986258 155.772533 center 0,0,0 model #1
move 320.246021,134.821908,0.034542 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!