Pairwise fitting emdb-5023 on emdb-8449 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-8449 by gmfit(PID:1364347).

RANK[1] Corr.Coeff:0.511 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-8449)
display:
color:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class D4 [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.511 0.499 0.499 0.487 0.486 0.485 0.484 0.478 0.370 0.370

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_8449.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.256834,-0.174503,0.950571 48.697077 center 0,0,0 model #1
    move 244.228041,-52.409262,38.713588 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!