Pairwise fitting emdb-5023 on emdb-6592 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-6592 by gmfit(PID:3957488).





RANK[1] Corr.Coeff:0.425

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-6592)

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CSF_closed_trimer in complex with the bnAb PGV04 [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.425
0.424
0.424
0.421
0.378
0.378
0.378
0.372
0.280
0.276







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6592.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.005161,-0.008761,0.999948 29.626660 center 0,0,0 model #1
move 83.645928,-117.662412,77.600821 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!