Pairwise fitting emdb-5023 on emdb-6583 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-6583 by gmfit(PID:4128805).

RANK[1] Corr.Coeff:0.545 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
color:
Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-6583)
display:
color:
Cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.545 0.544 0.542 0.541 0.538 0.538 0.537 0.533 0.494 0.427

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_6583.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.052260,0.945302,-0.321982 86.722326 center 0,0,0 model #1
    move 58.370951,54.963161,425.402190 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 6583)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4128805)]