Pairwise fitting emdb-5023 on emdb-6389 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-6389 by gmfit(PID:4129736).





RANK[1] Corr.Coeff:0.449

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-6389)

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Electron cryo-microscopy of AP-1:Arf1:Nef open trimer [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.449
0.441
0.432
0.428
0.409
0.408
0.408
0.395
0.306
0.301







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6389.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.003747,-0.031429,0.999499 103.287181 center 0,0,0 model #1
move 250.645956,-149.529886,-95.705590 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!