Pairwise fitting emdb-5023 on emdb-3316 by gmfit










Pairwise fitting of target emdb-5023 on reference emdb-3316 by gmfit(PID:1772221).





RANK[1] Corr.Coeff:0.432

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-5023)

display:



color:



Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-5023)]







REFERENCE(emdb-3316)

display:



color:


Cryo-EM structure of CSN-N8-CRL4ADDB2 at 8.3 A resolution [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.432
0.432
0.431
0.430
0.411
0.409
0.407
0.394
0.327
0.301







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3316.map.gz", and read it.

  2.  Download the Target map "emd_5023.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.071912,0.436176,0.896983 116.702309 center 0,0,0 model #1
move 64.653133,-342.697711,-229.031994 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 3316)]

[Download the target GMM(emdb 5023)]

[Download gmfit result file(1772221)]