Pairwise fitting emdb-5023 on emdb-3314 by gmfit



Pairwise fitting of target emdb-5023 on reference emdb-3314 by gmfit(PID:4091452).

RANK[1] Corr.Coeff:0.425 [JSmol] [Molmil]
TARGET(emdb-5023)
display:
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Molecular Structure of the Native HIV-1 gp120 trimer bound to CD4 and 17b: Membrane region [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-5023)]
REFERENCE(emdb-3314)
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Rigid part of the CSN-N8-CRL4A cryo-EM structure at 6.4 A resolution [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.425 0.405 0.402 0.398 0.390 0.378 0.374 0.366 0.249 0.247

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_3314.map.gz", and read it.
  2. Download the Target map "emd_5023.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.979153,0.099372,0.177159 38.434666 center 0,0,0 model #1
    move -202.972861,-142.723705,-214.393953 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 3314)] [Download the target GMM(emdb 5023)] [Download gmfit result file(4091452)]