Pairwise fitting emdb-1936 on pdb-5mq7 by gmfit










Pairwise fitting of target emdb-1936 on reference pdb-5mq7 by gmfit(PID:3784447).





RANK[1] Corr.Coeff:0.657

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1936)

display:



color:



N42 Rabbit Hemorrhagic Disease Virus (RHDV) T3 capsid [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1936)]







REFERENCE(pdb-5mq7)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.657
0.648
0.646
0.645
0.644
0.644
0.643
0.638
0.637
0.636







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5mq7"(PDB-format) or 
 "5mq7"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1936.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.242548,-0.944916,-0.219784 76.671399 center 0,0,0 model #1
move 295.747770,295.393605,295.083759 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!