Pairwise fitting emdb-1936 on pdb-3j6m by gmfit










Pairwise fitting of target emdb-1936 on reference pdb-3j6m by gmfit(PID:535192).





RANK[1] Corr.Coeff:0.048

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1936)

display:



color:



N42 Rabbit Hemorrhagic Disease Virus (RHDV) T3 capsid [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1936)]







REFERENCE(pdb-3j6m)

display:



color:


b'KINETIC AND STRUCTURAL ANALYSIS OF COXSACKIEVIRUS B3 RECEPTOR         ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.048
0.038
0.018
0.006
0.003
0.003
0.002
0.002
0.001
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j6m"(PDB-format) or 
 "3j6m"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1936.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.539175,-0.377158,-0.753022 99.067996 center 0,0,0 model #1
move 31.038660,0.280455,310.485896 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!