Pairwise fitting emdb-1936 on pdb-3j1p by gmfit



Pairwise fitting of target emdb-1936 on reference pdb-3j1p by gmfit(PID:1677623).

RANK[1] Corr.Coeff:0.106 [JSmol] [Molmil]
TARGET(emdb-1936)
display:
color:
N42 Rabbit Hemorrhagic Disease Virus (RHDV) T3 capsid [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1936)]
REFERENCE(pdb-3j1p)
display:
color:
b'ATOMIC MODEL OF RABBIT HEMORRHAGIC DISEASE VIRUS ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.106 0.074 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j1p"(PDB-format) or "3j1p"(mmCIF-format), and read it.
  2. Download the Target map "emd_1936.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.482475,-0.797705,0.361778 147.145505 center 0,0,0 model #1
    move 45.296789,72.452864,79.840359 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!