Pairwise fitting emdb-1936 on pdb-3iyo by gmfit



Pairwise fitting of target emdb-1936 on reference pdb-3iyo by gmfit(PID:1480912).

RANK[1] Corr.Coeff:0.108 [JSmol] [Molmil]
TARGET(emdb-1936)
display:
color:
N42 Rabbit Hemorrhagic Disease Virus (RHDV) T3 capsid [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1936)]
REFERENCE(pdb-3iyo)
display:
color:
b'CRYO-EM MODEL OF VIRION-SIZED HEV VIRION-SIZED CAPSID ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.108 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3iyo"(PDB-format) or "3iyo"(mmCIF-format), and read it.
  2. Download the Target map "emd_1936.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.064646,-0.540981,-0.838547 116.509392 center 0,0,0 model #1
    move 80.020140,98.654762,48.151095 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!