Pairwise fitting emdb-1908 on pdb-3j5y by gmfit










Pairwise fitting of target emdb-1908 on reference pdb-3j5y by gmfit(PID:2343876).





RANK[1] Corr.Coeff:0.576

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1908)

display:



color:



Unique structure of iC3b by 3D-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1908)]







REFERENCE(pdb-3j5y)

display:



color:


b'STRUCTURE OF THE MAMMALIAN RIBOSOMAL PRE-TERMINATION COMPLEX          ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.576
0.467
0.454
0.450
0.443
0.416
0.380
0.377
0.375
0.317







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j5y"(PDB-format) or 
 "3j5y"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1908.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.323179,0.535747,0.780083 74.137720 center 0,0,0 model #1
move 190.413747,35.477704,153.028191 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!