Pairwise fitting emdb-1836 on pdb-3j4p by gmfit










Pairwise fitting of target emdb-1836 on reference pdb-3j4p by gmfit(PID:1508840).





RANK[1] Corr.Coeff:0.088

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1836)

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color:



Conformational changes of Adeno-associated Virus type 1 induced by genome packaging [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1836)]







REFERENCE(pdb-3j4p)

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color:


b'ELECTRON MICROSCOPY ANALYSIS OF A DISACCHARIDE ANALOG COMPLEX REVEALS ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.088
0.001
0.000
0.000
0.000
0.000
0.000
0.000
0.000
0.000







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j4p"(PDB-format) or 
 "3j4p"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1836.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.842151,0.519197,-0.145656 122.900583 center 0,0,0 model #1
move -197.422751,37.690349,333.777664 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!