Pairwise fitting emdb-1836 on emdb-5415 by gmfit










Pairwise fitting of target emdb-1836 on reference emdb-5415 by gmfit(PID:4060112).





RANK[1] Corr.Coeff:0.961

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1836)

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Conformational changes of Adeno-associated Virus type 1 induced by genome packaging [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1836)]







REFERENCE(emdb-5415)

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Structure of AAV-DJ, a Retargeted Gene Therapy Vector: Cryo-Electron Microscopy at 4.5A resolution [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.961
0.940
0.929
0.926
0.926
0.924
0.921
0.919
0.905
0.892







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5415.map.gz", and read it.

  2.  Download the Target map "emd_1836.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.852224,-0.523139,0.006246 142.535653 center 0,0,0 model #1
move -166.977959,-172.859386,172.556627 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 5415)]

[Download the target GMM(emdb 1836)]

[Download gmfit result file(4060112)]