Pairwise fitting emdb-1774 on pdb-5voz by gmfit










Pairwise fitting of target emdb-1774 on reference pdb-5voz by gmfit(PID:474616).





RANK[1] Corr.Coeff:0.580

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1774)

display:



color:



Understanding Ribosome Assembly: The Structure of in vivo Assembled Immature 30S Subunits Revealed by Cryo-Electron Microscopy [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1774)]







REFERENCE(pdb-5voz)

display:



color:


b'YEAST V-ATPASE IN COMPLEX WITH LEGIONELLA PNEUMOPHILA EFFECTOR SIDK   ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.580
0.496
0.496
0.495
0.416
0.373
0.363
0.360
0.343
0.301







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5voz"(PDB-format) or 
 "5voz"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1774.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.788877,-0.256685,0.558378 166.987763 center 0,0,0 model #1
move 254.952230,259.662498,433.635459 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!