Pairwise fitting emdb-1774 on pdb-3j7a by gmfit



Pairwise fitting of target emdb-1774 on reference pdb-3j7a by gmfit(PID:1160226).

RANK[1] Corr.Coeff:0.768 [JSmol] [Molmil]
TARGET(emdb-1774)
display:
color:
Understanding Ribosome Assembly: The Structure of in vivo Assembled Immature 30S Subunits Revealed by Cryo-Electron Microscopy [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1774)]
REFERENCE(pdb-3j7a)
display:
color:
b'CRYO-EM STRUCTURE OF THE PLASMODIUM FALCIPARUM 80S RIBOSOME BOUND TO ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.768 0.629 0.531 0.493 0.488 0.462 0.412 0.412 0.382 0.334

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "3j7a"(PDB-format) or "3j7a"(mmCIF-format), and read it.
  2. Download the Target map "emd_1774.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.397290,-0.516754,0.758371 164.690792 center 0,0,0 model #1
    move 316.006227,529.137069,218.201201 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!