Pairwise fitting emdb-1770 on pdb-5xyu by gmfit



Pairwise fitting of target emdb-1770 on reference pdb-5xyu by gmfit(PID:4116088).

RANK[1] Corr.Coeff:0.854 [JSmol] [Molmil]
TARGET(emdb-1770)
display:
color:
30S-002mRNA (after classification) [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1770)]
REFERENCE(pdb-5xyu)
display:
color:
b'SMALL SUBUNIT OF MYCOBACTERIUM SMEGMATIS RIBOSOME ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.854 0.720 0.664 0.618 0.616 0.614 0.606 0.580 0.514 0.496

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5xyu"(PDB-format) or "5xyu"(mmCIF-format), and read it.
  2. Download the Target map "emd_1770.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.425136,0.897522,-0.117102 131.504931 center 0,0,0 model #1
    move 129.078826,178.835960,156.739606 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5xyu)] [Download the target GMM(emdb 1770)] [Download gmfit result file(4116088)]