Pairwise fitting emdb-1770 on pdb-5xyi by gmfit



Pairwise fitting of target emdb-1770 on reference pdb-5xyi by gmfit(PID:668405).

RANK[1] Corr.Coeff:0.835 [JSmol] [Molmil]
TARGET(emdb-1770)
display:
color:
30S-002mRNA (after classification) [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1770)]
REFERENCE(pdb-5xyi)
display:
color:
b'SMALL SUBUNIT OF TRICHOMONAS VAGINALIS RIBOSOME ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.835 0.738 0.655 0.652 0.647 0.641 0.631 0.621 0.597 0.573

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5xyi"(PDB-format) or "5xyi"(mmCIF-format), and read it.
  2. Download the Target map "emd_1770.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.672175,0.733566,0.100308 177.755792 center 0,0,0 model #1
    move 149.499998,236.575231,220.425791 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!