Pairwise fitting emdb-1770 on pdb-5xxu by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-5xxu by gmfit(PID:2177301).





RANK[1] Corr.Coeff:0.860

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-5xxu)

display:



color:


b'SMALL SUBUNIT OF TOXOPLASMA GONDII RIBOSOME                           ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.860
0.747
0.669
0.658
0.642
0.630
0.618
0.615
0.614
0.525







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5xxu"(PDB-format) or 
 "5xxu"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.718764,-0.691677,-0.070438 179.435700 center 0,0,0 model #1
move 160.290423,243.235285,225.678447 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!