Pairwise fitting emdb-1770 on pdb-5x8r by gmfit










Pairwise fitting of target emdb-1770 on reference pdb-5x8r by gmfit(PID:4073238).





RANK[1] Corr.Coeff:0.895

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1770)

display:



color:



30S-002mRNA (after classification) [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1770)]







REFERENCE(pdb-5x8r)

display:



color:


b'STRUCTURE OF THE 30S SMALL SUBUNIT OF CHLOROPLAST RIBOSOME FROM       ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.895
0.727
0.630
0.628
0.619
0.617
0.608
0.593
0.576
0.537







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5x8r"(PDB-format) or 
 "5x8r"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1770.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.202648,0.686763,0.698062 7.360598 center 0,0,0 model #1
move 241.787504,154.743579,188.700826 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5x8r)]

[Download the target GMM(emdb 1770)]

[Download gmfit result file(4073238)]